Package: phacking 0.2.1

Peter Solymos

phacking: Sensitivity Analysis for p-Hacking in Meta-Analyses

Fits right-truncated meta-analysis (RTMA), a bias correction for the joint effects of p-hacking (i.e., manipulation of results within studies to obtain significant, positive estimates) and traditional publication bias (i.e., the selective publication of studies with significant, positive results) in meta-analyses [see Mathur MB (2022). "Sensitivity analysis for p-hacking in meta-analyses." <doi:10.31219/osf.io/ezjsx>.]. Unlike publication bias alone, p-hacking that favors significant, positive results (termed "affirmative") can distort the distribution of affirmative results. To bias-correct results from affirmative studies would require strong assumptions on the exact nature of p-hacking. In contrast, joint p-hacking and publication bias do not distort the distribution of published nonaffirmative results when there is stringent p-hacking (e.g., investigators who hack always eventually obtain an affirmative result) or when there is stringent publication bias (e.g., nonaffirmative results from hacked studies are never published). This means that any published nonaffirmative results are from unhacked studies. Under these assumptions, RTMA involves analyzing only the published nonaffirmative results to essentially impute the full underlying distribution of all results prior to selection due to p-hacking and/or publication bias. The package also provides diagnostic plots described in Mathur (2022).

Authors:Peter Solymos [cre, ctb], Maya Mathur [aut], Mika Braginsky [aut]

phacking_0.2.1.tar.gz
phacking_0.2.1.zip(r-4.7)phacking_0.2.1.zip(r-4.6)phacking_0.2.1.zip(r-4.5)
phacking_0.2.1.tgz(r-4.6-x86_64)phacking_0.2.1.tgz(r-4.6-arm64)phacking_0.2.1.tgz(r-4.5-x86_64)phacking_0.2.1.tgz(r-4.5-arm64)
phacking_0.2.1.tar.gz(r-4.7-arm64)phacking_0.2.1.tar.gz(r-4.7-x86_64)phacking_0.2.1.tar.gz(r-4.6-arm64)phacking_0.2.1.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html
card.svg |card.png
phacking/json (API)
NEWS

# Install 'phacking' in R:
install.packages('phacking', repos = c('https://mathurlabstanford.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mathurlabstanford/phacking/issues

Pkgdown/docs site:https://mathurlabstanford.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

3.00 score 1 stars 7 scripts 284 downloads 4 exports 62 dependencies

Last updated from:c5cc0ed243. Checks:12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK314
linux-devel-x86_64OK338
source / vignettesOK302
linux-release-arm64OK303
linux-release-x86_64OK361
macos-release-arm64OK215
macos-release-x86_64OK413
macos-oldrel-arm64OK196
macos-oldrel-x86_64OK494
windows-develOK387
windows-releaseOK347
windows-oldrelOK383
wasm-releaseFAIL148

Exports:phacking_metartma_cdfrtma_qqplotz_density

Dependencies:abindbackportsBHcallrcheckmateclicpp11descdigestdistributionaldplyrfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrmathjaxrMatrixmatrixStatsmetabiasmetadatmetafornlmenumDerivpbapplypillarpkgbuildpkgconfigposteriorprocessxpspurrrQuickJSRR6rbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackrlangrstanrstantoolsS7scalesStanHeaderstensorAtibbletidyselecttruncnormutf8vctrsviridisLitewithr