{ "_id": "6a37885e3efcd9bda4418e23", "Package": "PublicationBias", "Title": "Sensitivity Analysis for Publication Bias in Meta-Analyses", "Version": "2.4.0", "Authors@R": "c(\nperson(\"Mika\", \"Braginsky\", email = \"mika.br@gmail.com\", role = c(\"aut\")),\nperson(\"Maya\", \"Mathur\", email = \"mmathur@stanford.edu\", role = c(\"aut\")),\nperson(\"Tyler J.\", \"VanderWeele\", email = \"tvanderw@hsph.harvard.edu\", role = c(\"aut\")),\nperson(\"Peter\", \"Solymos\", email = \"peter@analythium.io\", role = c(\"cre\", \"ctb\"), comment = c(ORCID = \"0000-0001-7337-1740\"))\n)", "Description": "Performs sensitivity analysis for publication bias in\nmeta-analyses (per Mathur & VanderWeele, 2020\n[]). These analyses enable\nstatements such as: \"For publication bias to shift the observed\npoint estimate to the null, 'significant' results would need to\nbe at least 30-fold more likely to be published than negative\nor 'nonsignificant' results.\" Comparable statements can be made\nregarding shifting to a chosen non-null value or shifting the\nconfidence interval. Provides a worst-case meta-analytic point\nestimate under maximal publication bias obtained simply by\nconducting a standard meta-analysis of only the negative and\n\"nonsignificant\" studies.", "License": "GPL-2", "URL": "https://github.com/mathurlabstanford/PublicationBias,\nhttps://mathurlabstanford.github.io/PublicationBias/", "BugReports": "https://github.com/mathurlabstanford/PublicationBias/issues", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "Roxygen": "list(markdown = TRUE)", "RdMacros": "Rdpack", "Config/testthat/edition": "3", "Repository": "https://mathurlabstanford.r-universe.dev", "Date/Publication": "2023-08-18 19:48:17 UTC", "RemoteUrl": "https://github.com/mathurlabstanford/publicationbias", "RemoteRef": "HEAD", "RemoteSha": "748b33e9c7abd60346e998163cc445118499d48a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-21 06:41:57 UTC", "User": "root" }, "Author": "Mika Braginsky [aut],\nMaya Mathur [aut],\nTyler J. VanderWeele [aut],\nPeter Solymos [cre, ctb] (ORCID:\n)", "Maintainer": "Peter Solymos ", "MD5sum": "c13fcebaef26b393173c146b43309200", "_user": "mathurlabstanford", "_type": "src", "_file": "PublicationBias_2.4.0.tar.gz", "_fileid": "84dfb4a04f9ca6e2d55e8e7a8df136fb8aa8c5cc63e3ceb6a9477bf055f6afd1", "_filesize": 147657, "_sha256": "84dfb4a04f9ca6e2d55e8e7a8df136fb8aa8c5cc63e3ceb6a9477bf055f6afd1", "_created": "2026-06-21T06:41:57.000Z", "_published": "2026-06-21T06:44:46.929Z", "_distro": "noble", "_jobs": [ { "job": 82548226788, "time": 141, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7772672394" }, { "job": 82548226789, "time": 135, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7772671930" }, { "job": 82548226792, "time": 97, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7772666431" }, { "job": 82548226796, "time": 98, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7772666693" }, { "job": 82548060929, "time": 155, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7772653442" }, { "job": 82548226776, "time": 116, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7772669170" }, { "job": 82548226801, "time": 126, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7772670457" }, { "job": 82548226805, "time": 111, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7772668570" }, { "job": 82548226800, "time": 97, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7772666530" } ], "_buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mathurlabstanford/publicationbias", "_commit": { "id": "748b33e9c7abd60346e998163cc445118499d48a", "author": "Peter Solymos ", "committer": "Peter Solymos ", "message": "Update docs\n\nSigned-off-by: Peter Solymos \n", "time": 1692388097 }, "_maintainer": { "name": "Peter Solymos", "email": "peter@analythium.io", "login": "psolymos", "linkedin": "in/peter-solymos", "twitter": "@psolymos", "description": "Tech-bio-nerd", "uuid": 831636, "orcid": "0000-0001-7337-1740" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "metabias", "role": "Imports" }, { "package": "metafor", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "robumeta", "role": "Imports" }, { "package": "purrr", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "mathurlabstanford", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "mikabr", "count": 52, "uuid": 1414971 }, { "user": "mayamathur", "count": 25, "uuid": 8933150 }, { "user": "psolymos", "count": 4, "uuid": 831636 } ], "_userbio": { "uuid": 124089885, "type": "organization", "name": "Mathur Lab at Stanford", "followers": 0 }, "_downloads": { "count": 437, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PublicationBias" }, "_mentions": 3, "_devurl": "https://github.com/mathurlabstanford/publicationbias", "_pkgdown": "https://mathurlabstanford.github.io/PublicationBias/", "_searchresults": 18, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/PublicationBias.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/mathurlabstanford/publicationbias", "_realowner": "mathurlabstanford", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2019-04-01" }, { "version": "1.1.0", "date": "2019-10-26" }, { "version": "2.0.0", "date": "2020-03-30" }, { "version": "2.1.0", "date": "2020-07-09" }, { "version": "2.2.0", "date": "2020-07-22" }, { "version": "2.3.0", "date": "2023-01-20" }, { "version": "2.4.0", "date": "2023-08-19" } ], "_exports": [ "corrected_meta", "pubbias_meta", "pubbias_svalue", "pval_plot", "significance_funnel", "svalue" ], "_help": [ { "page": "pubbias_meta", "title": "Estimate publication bias-corrected meta-analysis", "topics": [ "corrected_meta", "pubbias_meta" ] }, { "page": "pval_plot", "title": "Plot one-tailed p-values", "topics": [ "pval_plot" ] }, { "page": "significance_funnel", "title": "Make significance funnel plot", "topics": [ "significance_funnel" ] } ], "_readme": "https://github.com/mathurlabstanford/publicationbias/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "digest", "dplyr", "farver", "generics", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "mathjaxr", "Matrix", "metabias", "metadat", "metafor", "nlme", "numDeriv", "pbapply", "pillar", "pkgconfig", "R6", "rbibutils", "RColorBrewer", "Rdpack", "rlang", "robumeta", "S7", "scales", "tibble", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_score": 3.7323937598229686, "_indexed": true, "_nocasepkg": "publicationbias", "_universes": [ "mathurlabstanford", "psolymos" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.4.0", "date": "2026-06-21T06:43:56.000Z", "distro": "noble", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "d2a107e024d6eae55416d6944a9e353b7cba67a2ddde48cb445410c0876dc879", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" }, { "r": "4.6.0", "os": "linux", "version": "2.4.0", "date": "2026-06-21T06:43:55.000Z", "distro": "noble", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "b3e4450a83471ec81b423ed64469e43122ed729e2bd93120a3538ba35f68911e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" }, { "r": "4.5.3", "os": "mac", "version": "2.4.0", "date": "2026-06-21T06:43:27.000Z", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "98b4cace66338d6121b57d05709e91dffc43bbc9823075f88ea37d60a18d8946", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" }, { "r": "4.6.0", "os": "mac", "version": "2.4.0", "date": "2026-06-21T06:43:26.000Z", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "7199c60a807a134bb02b2e82b1dac6800ae7afffd8c07ecbc3a15d86c60814e9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" }, { "r": "4.6.0", "os": "wasm", "version": "2.4.0", "date": "2026-06-21T06:44:08.000Z", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "6d7258b2c043376aa951c7cfb946a787b0372c4f939eb83eb29c3938ed8ce4aa", "status": "success", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" }, { "r": "4.7.0", "os": "win", "version": "2.4.0", "date": "2026-06-21T06:43:30.000Z", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "5b12bb00ee170650c5c73c2d964def6e55f3c505d541d666f770fa8d9db61cc6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" }, { "r": "4.5.3", "os": "win", "version": "2.4.0", "date": "2026-06-21T06:43:19.000Z", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "c1b9736f6e2c1cb319071b831762666ccd43a160f5536efdfe5bfc01d865bda2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" }, { "r": "4.6.0", "os": "win", "version": "2.4.0", "date": "2026-06-21T06:43:07.000Z", "commit": "748b33e9c7abd60346e998163cc445118499d48a", "fileid": "bcba504253ad478b2211c33655020ba3f2ad52fc5c3189f98436b02fc575ffdf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mathurlabstanford/actions/runs/27896191732" } ] }